References and further reading
Online Documentation and Resources
Advanced Bash-Scripting Guide: https://tldp.org/LDP/abs/html/
GNU compiler online documentation: http://gcc.gnu.org/onlinedocs/
MPI Home pages: http://www-unix.mcs.anl.gov/mpi/
Free MPI implementation useful for testing: http://www.open-mpi.org/software/ompi/v1.2/
Various HPC Workshops by NCCS: http://www.nccs.gov/user-support/training-education/workshop-archives/
An HPC tutorial: http://www.llnl.gov/computing/hpc/training/
An MPI tutorial: http://www-unix.mcs.anl.gov/mpi/tutorial/gropp/talk.html
HPC tutorials by NCSA http://www.citutor.org/login.html
Oak Ridge National Laboratory : https://docs.olcf.ornl.gov/software/index.html
MPI programming
MPI: The Complete Reference. Snir, Otto, Huss-Lederman, Walker and Dongarra. MIT Press. ISBN 0 262 69184 1
MPI: The Complete Reference, volume 2. Gropp et al. MIT Press. ISBN 0262571234
Using MPI. Gropp, Lusk, Skjellum. MIT Press. ISBN 0 262 57104 8
OpenMP programming
Parallel Programming in OpenMP. Chandra, Kohr, Menon, Dagum, Maydan, McDonald. Morgan Kaufmann. ISBN: 1558606718
Parallel programming
Practical Parallel Programming. Gregory V. Wilson. MIT Press. ISBN 0 262 23186 7
Designing and Building Parallel Programs. Ian Foster. Addison-Wesley. ISBN 0 201 57594 9 http://www.mcs.anl.gov/dbpp/
Parallel Computing Works! Roy D. Williams, Paul C. Messina (Editor), Geoffrey Fox (Editor), Mark Fox Morgan Kaufmann Publishers; ISBN: 1558602534
Parallel programming with MPI. Peter S. Pancheco. The complete set of C and Fortran example programs for this book are available at: http://www.cs.usfca.edu/mpi
Programming languages
Fortran90/95 Explained. Metcalf and Reid. Oxford Science Publications. ISBN 0 19 851888 9
Fortran 90 Programming. Ellis, Philips, Lahey. Addison-Wesley. ISBN 0-201-54446-6
Programmers Guide to Fortran90. Brainerd, Goldberg, Adams. Unicomp. ISBN 0-07-000248-7
The High Performance Fortran Handbook. Koelbel, Loveman, Schreiber, Steele, Zosel. ISBN 0-262-11185-3 / 0-262-61094-9
Parallel Programming using C++. G.V.Wilson and P Lu. MIT Press. ISBN 0 262 73118 5
Programming skills
Debugging and Performance Tuning for Parallel Computing Systems, Simmons et al.
Foundations of Parallel Programming, A Machine-independent Approach, Lewis.