Bioinformatic tools

qiime2 installation (using conda)

Following the instructions in https://docs.qiime2.org/2023.5/install/native/#install-qiime-2-within-a-conda-environment

conda update conda

conda install wget


wget https://data.qiime2.org/distro/core/qiime2-2023.5-py38-linux-conda.yml

conda env create -n qiime2-2023.5 --file qiime2-2023.5-py38-linux-conda.yml

conda activate qiime2-2023.5

qiime --help

Do not forget to load your environment in your job submission script.