HPC-UoP

Foseres User Guide:

  • Introduction
  • HPC system policy
  • Connecting to foseres
  • Data Transfer Guide
  • File and Resource Management
  • GNU Parallel
  • Application Development Environment
  • Running Jobs on foseres
  • Using Conda
  • Using Python
  • Some R examples
  • Using Matlab
  • Bioinformatic tools
  • Using containers
  • References and further reading

Training:

  • Introduction to HPC@UoP
HPC-UoP
  • Welcome to HPC-UoP’s documentation!
  • View page source

Welcome to HPC-UoP’s documentation!

Foseres User Guide:

  • Introduction
    • Acknowledging foseres
    • Getting help
    • Training
    • Hardware
  • HPC system policy
    • HPC Usage Policy
    • HPC account suspension
    • Acknowledging foseres in Publications
    • Allocation policy
  • Connecting to foseres
    • Access credentials
    • SSH Clients
    • Making access more convenient using the SSH configuration file
  • Data Transfer Guide
    • scp command
    • rsync command
  • File and Resource Management
    • Checking your CPU-time allocation
    • Disk quotas
    • File permissions and security
    • Backup policies
  • GNU Parallel
  • Application Development Environment
    • Using the modules environment
    • Available Compiler Suites
    • Compiling MPI codes
    • Compiler Information and Options
  • Running Jobs on foseres
    • Using Slurm
    • Queues
    • Output from Slurm jobs
    • Running MPI parallel jobs
    • Example parallel MPI job submission scripts
    • Interactive Jobs
    • Advanced topics
  • Using Conda
  • Using Python
  • Some R examples
  • Using Matlab
    • Basic commands
    • Example sbatch and Matlab scripts
    • Configuring Matlab’s path on your user account
  • Bioinformatic tools
    • qiime2 installation (using conda)
  • Using containers
  • References and further reading
    • Online Documentation and Resources
    • MPI programming
    • OpenMP programming
    • Parallel programming
    • Programming languages
    • Programming skills

Training:

  • Introduction to HPC@UoP
    • Workshop January 2024
    • Workshop June 2022

Indices and tables

  • Index

  • Module Index

  • Search Page

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