Welcome to HPC-UoP’s documentation!

Foseres User Guide:

• Introduction
  • Acknowledging foseres
  • Getting help
  • Training
  • Hardware
• HPC system policy
  • HPC Usage Policy
  • HPC account suspension
  • Acknowledging foseres in Publications
  • Allocation policy
• Connecting to foseres
  • Access credentials
  • SSH Clients
  • Making access more convenient using the SSH configuration file
• Data Transfer Guide
  • scp command
  • rsync command
• File and Resource Management
  • Checking your CPU-time allocation
  • Disk quotas
  • File permissions and security
  • Backup policies
• GNU Parallel
• Application Development Environment
  • Using the modules environment
  • Available Compiler Suites
  • Compiling MPI codes
  • Compiler Information and Options
• Running Jobs on foseres
  • Using Slurm
  • Queues
  • Output from Slurm jobs
  • Running MPI parallel jobs
  • Example parallel MPI job submission scripts
  • Interactive Jobs
  • Advanced topics
• Using Conda
• Using Python
• Some R examples
• Using Matlab
  • Basic commands
  • Example sbatch and Matlab scripts
  • Configuring Matlab’s path on your user account
• Bioinformatic tools
  • qiime2 installation (using conda)
• Using containers
• References and further reading
  • Online Documentation and Resources
  • MPI programming
  • OpenMP programming
  • Parallel programming
  • Programming languages
  • Programming skills

Training:

• Introduction to HPC@UoP
  • Workshop January 2024
  • Workshop June 2022

Indices and tables

• Index

• Module Index

• Search Page